Commit Graph

4 Commits

Author SHA1 Message Date
James a2141bb5d3 Checkpoint: all pending changes across lib, portal, api, tools
Extraction prompts refined, dossier sections expanded, MCP tools
enhanced, genome/oauth/upload improvements, health-poller added,
import-genome removed, landing/pricing/dashboard template updates,
carousel images, consent/docs templates, rquery/dbquery tools,
CLAUDE.md and docs updates.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-11 23:37:44 -04:00
James 75e9ec7722 Refactor: Remove legacy v2, data, roles modules; update auth, queries, translations, portal MCP tools 2026-02-13 15:30:22 -05:00
James 6486a52ad9 refactor: complete RBAC redesign with hierarchical permissions
Simplify access control from 500+ lines to ~50 lines of core logic:
- New permission bitmask (PermRead/Write/Delete/Manage)
- Hierarchical access (dossier → category → entry)
- Single choke points: CheckAccess(), EntryQuery(), DossierQuery()
- All data access now enforced through lib RBAC layer
- Removed complex role templates and permission caching

Also improved NewID() to use UUID v4 + SHA-256 hash for better
randomness distribution (was limited to 0-7 hex start).

Net -210 lines across 28 files. Ready for staging deployment.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-11 00:06:02 -05:00
James c1cd76559d fix: genome query RBAC - use system context for data access
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
  GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-07 16:31:17 -05:00