- Fix lab chart reference bands: parse DOB in DossierFromEntry, generate
deterministic ref_ids in import-caliper (was collapsing 4363 rows to 1)
- Consolidate DossierFromEntry into lib/dbcore.go (eliminate portal duplicate)
- Add Import field to entries for batch undo (NextImportID, all import paths)
- MyChart direct JSON parsing (skip Gemini for structured lab data)
- Multi-order extraction from markdown/text tables
- Normalize progress callback for UI feedback
- DICOM import, genome import, API, portal, MCP, translation updates
- Remove test DICOM data from repo
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Rename Query→dbQuery, Save→dbSave, Load→dbLoad, Delete→dbDelete,
Count→dbCount in lib/db_queries.go. Go compiler now prevents any code
outside lib/ from bypassing RBAC checks.
All external callers migrated to RBAC-checked functions:
- EntryCategoryCounts, EntryCount, EntryListByDossier (new)
- LabTestList, LabEntryListForIndex, LabRefLookupAll (new)
- GenomeQuery now requires AccessContext
- EntryDeleteByCategory/EntryDeleteTree now require AccessContext
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Changed from empty accessorID bypassing checks to explicit SystemAccessorID
for better security and audit trail.
Before: accessorID == "" → bypass all checks (security risk)
After: accessorID == "system-internal" → bypass (explicit, auditable)
Changes:
- Added SystemAccessorID constant = "system-internal"
- Updated SystemContext to use SystemAccessorID
- Updated checkAccess() to check for specific ID
- Updated accessorIDFromContext() to return SystemAccessorID
- Updated all EntryList calls to use SystemAccessorID
- Updated auth.go helpers to use SystemAccessorID
Benefits:
- Explicit backdoor ID visible in audit logs
- No accidental bypass from empty strings
- Clear intent for system operations
- Can't collide with real hex dossier IDs (uses "system" prefix)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Complete refactor from AccessContext struct to simple accessorID string
parameter for RBAC enforcement, as requested. All access control remains
in lib layer - API/Portal just pass accessor + dossier to lib functions.
Changes:
- Added accessorIDFromContext() helper in lib/v2.go
- Updated all checkAccess() calls to extract accessorID from context
- Updated all EntryList() calls (nil → "" for system context)
- Fixed auth.go helper functions to extract accessorID
- Updated categories API to pass accessor through to lib
All RBAC enforcement stays in lib - no API-level access checks.
Empty accessorID bypasses checks (system/internal operations).
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
James
Johan