- Remove API-level access checks (requireDossierAccess)
- Pass user context to lib functions instead of system context
- Single enforcement point: lib.EntryList/EntryGet/etc check access
- Fixes EnsureCategoryEntry to use EntryWrite (correct function name)
All access control now happens at the lowest level in lib.
API and MCP layers just pass context through.
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
James
Johan