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4 Commits

Author SHA1 Message Date
James c1cd76559d fix: genome query RBAC - use system context for data access 
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
  GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
 2026-02-07 16:31:17 -05:00
James 6fc2a08ea5 Rename import_dicom to import-dicom for consistency 2026-02-04 23:02:39 -05:00
Johan Jongsma e46abbdddd fix: extracted events are root entries, documents are references 
- Reversed parent-child relationship: events/assessments are now root level
- Source document stored in data.source_id instead of parent_id
- Generic section summary uses section ID (e.g., '2 medications' not '2 items')
- Reprocessed Anastasiia's 62 entries
 2026-02-02 07:22:27 +00:00
Johan 94946baf00 Initial commit 2026-02-01 02:43:27 -05:00