- Replace N separate SQL queries with single IN clause for rsids and genes
- Dedup results by rsid, merging categories from multiple tiers
- Add repute filter (Good/Bad/Clear) to genome queries
- Expose limit/offset as MCP parameters
- Add genotype to search check
- Fix category filter in genomeEntriesToResult
- Remove deprecated api/api_categories.go and api/api_genome.go
- Change GenomeMatch to use Categories []string instead of Category+Subcategory
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Move GenomeQuery logic from api/api_genome.go to lib/v2.go so MCP
handler calls lib directly instead of HTTP round-trip (fixes 403 on
genome queries via Claude.ai MCP - was hitting RBAC table mismatch)
- Generate CategoryFromString from categoryNames in init() (single
source of truth, removes 9 unused aliases)
- Redact sensitive variants (Bad repute, magnitude >4) in targeted
queries: genotype/summary replaced with "hidden" + hint to use
include_hidden=true. Broad queries still suppress entirely.
- API handler is now a thin wrapper parsing query params
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Add /legal/terms with comprehensive ToS content
- Add terms link to footer navigation
- Add /legal/terms to defense.go whitelist for external access
- Update privacy policy and DPA templates with improved styling
- Refactor RBAC editor template formatting
- Add prompts AI setup documentation
- Include database migration scripts
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
James
Johan