Commit Graph

9 Commits

Author SHA1 Message Date
James a2141bb5d3 Checkpoint: all pending changes across lib, portal, api, tools
Extraction prompts refined, dossier sections expanded, MCP tools
enhanced, genome/oauth/upload improvements, health-poller added,
import-genome removed, landing/pricing/dashboard template updates,
carousel images, consent/docs templates, rquery/dbquery tools,
CLAUDE.md and docs updates.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-11 23:37:44 -04:00
James ee40b3a81b import-renpho, v2 readings API, dashboard lab chips, portal updates
- Add import-renpho: Go binary to sync Renpho body composition data
  into inou vitals via direct EntryWrite (AES-128/ECB Renpho API client,
  13 body metrics, dedup, auto RBAC grants, -setup/-discover modes)
- Add POST /api/v2/readings endpoint for batch vital ingest
- Fix dashboard lab chip: filter by lab_order not lab_report
- Portal: upload handler, dossier page rework, dashboard updates
- Remove tools/fix-lang (replaced by toolkit translate)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-28 04:54:58 -05:00
James 033d558535 Portal: upload handler, dossier rework, dashboard updates, normalize fixes
- portal/upload.go: new file upload handler (360 lines)
- portal/templates/dossier.tmpl: major rework (469 changes)
- portal/templates/upload.tmpl, dashboard.tmpl: UI updates
- lib/normalize.go, llm.go, config.go: library fixes
- portal/dossier_sections.go, main.go: portal logic
- portal/lang/en.yaml: string updates
- cmd/populate-search-key: search key population tool
- Makefile, style.css: build and style updates
2026-02-25 20:01:11 -05:00
James cc1dd7690c Lab reference charts, import tracking, DossierFromEntry consolidation
- Fix lab chart reference bands: parse DOB in DossierFromEntry, generate
  deterministic ref_ids in import-caliper (was collapsing 4363 rows to 1)
- Consolidate DossierFromEntry into lib/dbcore.go (eliminate portal duplicate)
- Add Import field to entries for batch undo (NextImportID, all import paths)
- MyChart direct JSON parsing (skip Gemini for structured lab data)
- Multi-order extraction from markdown/text tables
- Normalize progress callback for UI feedback
- DICOM import, genome import, API, portal, MCP, translation updates
- Remove test DICOM data from repo

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-24 05:15:03 -05:00
James 715fdb9ba6 Fix misleading auth docs and Grok token instruction
api-docs.txt: token is NOT the dossier ID — it's a time-limited encrypted
string. Point users to /connect for token generation.

install_public.tmpl: Grok prompt now points to /connect (Grok tab) for
the token, not /dashboard which doesn't show it.
2026-02-23 02:21:57 -05:00
James c1cd76559d fix: genome query RBAC - use system context for data access
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
  GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-07 16:31:17 -05:00
Johan 9190ca1443 Merge remote 'Initial commit from dev' with local master
Conflicts resolved:
- soc2 docs: used remote (updated versions)
- go.mod/go.sum: kept local (full dependencies)
- lib/*.go: kept local (production FIPS, no hardcoded keys)
- .gitignore: kept local (comprehensive)
- test/*.sh: kept local (executable permissions)

Includes: Flutter app, design system, templates, static assets
2026-02-01 04:00:45 -05:00
Johan Jongsma dd160f8451 Initial commit from dev 2026-02-01 08:03:12 +00:00
Johan 94946baf00 Initial commit 2026-02-01 02:43:27 -05:00