Rename Query→dbQuery, Save→dbSave, Load→dbLoad, Delete→dbDelete,
Count→dbCount in lib/db_queries.go. Go compiler now prevents any code
outside lib/ from bypassing RBAC checks.
All external callers migrated to RBAC-checked functions:
- EntryCategoryCounts, EntryCount, EntryListByDossier (new)
- LabTestList, LabEntryListForIndex, LabRefLookupAll (new)
- GenomeQuery now requires AccessContext
- EntryDeleteByCategory/EntryDeleteTree now require AccessContext
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Replace N separate SQL queries with single IN clause for rsids and genes
- Dedup results by rsid, merging categories from multiple tiers
- Add repute filter (Good/Bad/Clear) to genome queries
- Expose limit/offset as MCP parameters
- Add genotype to search check
- Fix category filter in genomeEntriesToResult
- Remove deprecated api/api_categories.go and api/api_genome.go
- Change GenomeMatch to use Categories []string instead of Category+Subcategory
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Move GenomeQuery logic from api/api_genome.go to lib/v2.go so MCP
handler calls lib directly instead of HTTP round-trip (fixes 403 on
genome queries via Claude.ai MCP - was hitting RBAC table mismatch)
- Generate CategoryFromString from categoryNames in init() (single
source of truth, removes 9 unused aliases)
- Redact sensitive variants (Bad repute, magnitude >4) in targeted
queries: genotype/summary replaced with "hidden" + hint to use
include_hidden=true. Broad queries still suppress entirely.
- API handler is now a thin wrapper parsing query params
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Replace specific DPO name with generic privacy email across all legal templates
- Update DPA to clarify third-party services vs sub-processors distinction
- Add privacy policy and DPA cross-references in Terms
- Add intellectual property section to Terms
- Improve prompts UI with Yes/No buttons, section headers, and better visual hierarchy
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add /legal/terms with comprehensive ToS content
- Add terms link to footer navigation
- Add /legal/terms to defense.go whitelist for external access
- Update privacy policy and DPA templates with improved styling
- Refactor RBAC editor template formatting
- Add prompts AI setup documentation
- Include database migration scripts
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Removed the backward compatibility fallback that checked the old
dossier_access table from CanManageDossier/CanAccessDossier - it was
a security risk (hidden path that bypassed the new RBAC system).
Instead, added MigrateOldAccess() that converts existing dossier_access
entries to proper access grants on startup (idempotent - skips existing).
Migration rules:
- Self-references (accessor == target) skipped (owner access is automatic)
- can_edit = 1 → "rwdm" root grant
- can_edit = 0 → "r" root grant
- Role set to "Migrated" for tracking
Result: 12 grants migrated from old table.
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Updated "Edit" button in dossier Privacy section to open new RBAC editor
instead of old access editor. Users can now access granular per-category
permissions directly from the dossier page.
Location: Privacy section → Edit button next to each person with access
Route changed: /dossier/{id}/access/{grantee_id} → /dossier/{id}/rbac/{grantee_id}
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Changed from empty accessorID bypassing checks to explicit SystemAccessorID
for better security and audit trail.
Before: accessorID == "" → bypass all checks (security risk)
After: accessorID == "system-internal" → bypass (explicit, auditable)
Changes:
- Added SystemAccessorID constant = "system-internal"
- Updated SystemContext to use SystemAccessorID
- Updated checkAccess() to check for specific ID
- Updated accessorIDFromContext() to return SystemAccessorID
- Updated all EntryList calls to use SystemAccessorID
- Updated auth.go helpers to use SystemAccessorID
Benefits:
- Explicit backdoor ID visible in audit logs
- No accidental bypass from empty strings
- Clear intent for system operations
- Can't collide with real hex dossier IDs (uses "system" prefix)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Complete refactor from AccessContext struct to simple accessorID string
parameter for RBAC enforcement, as requested. All access control remains
in lib layer - API/Portal just pass accessor + dossier to lib functions.
Changes:
- Added accessorIDFromContext() helper in lib/v2.go
- Updated all checkAccess() calls to extract accessorID from context
- Updated all EntryList() calls (nil → "" for system context)
- Fixed auth.go helper functions to extract accessorID
- Updated categories API to pass accessor through to lib
All RBAC enforcement stays in lib - no API-level access checks.
Empty accessorID bypasses checks (system/internal operations).
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- New dossier_sections.go with DossierSection struct and BuildDossierSections()
- Single section_block template replaces 12+ copy-pasted HTML blocks
- All 26 categories supported with default handler for unknown ones
- /dossier/{id} now uses v2, /dossier/{id}/v1 keeps legacy
- Added missing translation keys for all section types
- CSS: added .section-children and .hidden-row classes
James
Johan Jongsma