inou/portal/mcp_tools.go

package main

import (
	"encoding/base64"
	"encoding/json"
	"fmt"
	"io"
	"net/http"
	"net/url"
	"strconv"
)

// MCP Tool Implementations
// These call the internal API endpoints to get data

const apiBaseURL = "http://localhost:8082" // Internal API server

func mcpAPICall(accessToken, path string, params map[string]string) ([]byte, error) {
	u := apiBaseURL + path
	if params != nil && len(params) > 0 {
		v := url.Values{}
		for k, val := range params {
			if val != "" {
				v.Set(k, val)
			}
		}
		u += "?" + v.Encode()
	}

	req, err := http.NewRequest("GET", u, nil)
	if err != nil {
		return nil, err
	}
	// Use the access token for auth
	req.Header.Set("Authorization", "Bearer "+accessToken)

	client := &http.Client{}
	resp, err := client.Do(req)
	if err != nil {
		return nil, err
	}
	defer resp.Body.Close()

	body, err := io.ReadAll(resp.Body)
	if err != nil {
		return nil, err
	}

	if resp.StatusCode != 200 {
		return nil, fmt.Errorf("HTTP %d: %s", resp.StatusCode, string(body))
	}

	return body, nil
}

func mcpListDossiers(accessToken string) (string, error) {
	body, err := mcpAPICall(accessToken, "/api/v1/dossiers", nil)
	if err != nil {
		return "", err
	}
	// Pretty print JSON
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpListStudies(accessToken, dossier string) (string, error) {
	body, err := mcpAPICall(accessToken, "/api/v1/dossiers/"+dossier+"/entries", map[string]string{"category": "imaging"})
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpListSeries(accessToken, dossier, study string) (string, error) {
	body, err := mcpAPICall(accessToken, "/api/v1/dossiers/"+dossier+"/entries", map[string]string{"parent": study})
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpListSlices(accessToken, dossier, series string) (string, error) {
	body, err := mcpAPICall(accessToken, "/api/v1/dossiers/"+dossier+"/entries", map[string]string{"parent": series})
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpFetchImage(accessToken, dossier, slice string, wc, ww float64) (map[string]interface{}, error) {
	params := map[string]string{}
	if wc != 0 {
		params["wc"] = strconv.FormatFloat(wc, 'f', 0, 64)
	}
	if ww != 0 {
		params["ww"] = strconv.FormatFloat(ww, 'f', 0, 64)
	}

	body, err := mcpAPICall(accessToken, "/image/"+slice, params)
	if err != nil {
		return nil, err
	}

	b64 := base64.StdEncoding.EncodeToString(body)
	return mcpImageContent(b64, "image/webp", fmt.Sprintf("Slice %s (%d bytes)", slice[:8], len(body))), nil
}

func mcpFetchContactSheet(accessToken, dossier, series string, wc, ww float64) (map[string]interface{}, error) {
	params := map[string]string{}
	if wc != 0 {
		params["wc"] = strconv.FormatFloat(wc, 'f', 0, 64)
	}
	if ww != 0 {
		params["ww"] = strconv.FormatFloat(ww, 'f', 0, 64)
	}

	body, err := mcpAPICall(accessToken, "/contact-sheet.webp/"+series, params)
	if err != nil {
		return nil, err
	}

	b64 := base64.StdEncoding.EncodeToString(body)
	return mcpImageContent(b64, "image/webp", fmt.Sprintf("Contact sheet %s (%d bytes)", series[:8], len(body))), nil
}

func mcpListLabTests(accessToken, dossier string) (string, error) {
	body, err := mcpAPICall(accessToken, "/api/labs/tests", map[string]string{"dossier": dossier})
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpGetLabResults(accessToken, dossier, names, from, to string, latest bool) (string, error) {
	params := map[string]string{"dossier": dossier, "names": names}
	if from != "" {
		params["from"] = from
	}
	if to != "" {
		params["to"] = to
	}
	if latest {
		params["latest"] = "true"
	}

	body, err := mcpAPICall(accessToken, "/api/labs/results", params)
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpGetCategories(accessToken, dossier, typ, category string) (string, error) {
	params := map[string]string{"dossier": dossier}
	if typ != "" {
		params["type"] = typ
	}
	if category != "" {
		params["category"] = category
	}

	body, err := mcpAPICall(accessToken, "/api/categories", params)
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}

func mcpQueryGenome(accessToken, dossier, gene, search, category, rsids string, minMag float64, includeHidden bool) (string, error) {
	params := map[string]string{"dossier": dossier}
	if gene != "" {
		params["gene"] = gene
	}
	if search != "" {
		params["search"] = search
	}
	if category != "" {
		params["category"] = category
	}
	if rsids != "" {
		params["rsids"] = rsids
	}
	if minMag > 0 {
		params["min_magnitude"] = strconv.FormatFloat(minMag, 'f', -1, 64)
	}
	if includeHidden {
		params["include_hidden"] = "true"
	}

	body, err := mcpAPICall(accessToken, "/api/genome", params)
	if err != nil {
		return "", err
	}
	var data interface{}
	json.Unmarshal(body, &data)
	pretty, _ := json.MarshalIndent(data, "", "  ")
	return string(pretty), nil
}