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James 77db02a6eb feat: optimize genome queries with IN clauses, dedup, repute filter 
- Replace N separate SQL queries with single IN clause for rsids and genes
- Dedup results by rsid, merging categories from multiple tiers
- Add repute filter (Good/Bad/Clear) to genome queries
- Expose limit/offset as MCP parameters
- Add genotype to search check
- Fix category filter in genomeEntriesToResult
- Remove deprecated api/api_categories.go and api/api_genome.go
- Change GenomeMatch to use Categories []string instead of Category+Subcategory

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
 		2026-02-10 02:13:18 -05:00
..
._db_schema.go Initial commit from dev 2026-02-01 08:03:12 +00:00
access.go feat: add Terms of Service page and legal page updates 2026-02-08 04:59:59 -05:00
config.go feat: fix year interpretation, new schedule format, exclude today from backfill 2026-02-09 02:00:18 -05:00
crypto.go Initial commit from dev 2026-02-01 08:03:12 +00:00
data.go Initial commit from dev 2026-02-01 08:03:12 +00:00
db_auth.go Initial commit from dev 2026-02-01 08:03:12 +00:00
db_queries.go Initial commit from dev 2026-02-01 08:03:12 +00:00
db_schema.go Initial commit from dev 2026-02-01 08:03:12 +00:00
email.go Initial commit from dev 2026-02-01 08:03:12 +00:00
errors.go Initial commit from dev 2026-02-01 08:03:12 +00:00
files.go Initial commit from dev 2026-02-01 08:03:12 +00:00
journal.go fix: update /prompts/respond route to /trackers/respond 2026-02-09 05:21:35 -05:00
lab_reference.go fix: genome query RBAC - use system context for data access 2026-02-07 16:31:17 -05:00
llm.go refactor: rename prompt to tracker everywhere 2026-02-09 02:05:17 -05:00
migrate_category.go Initial commit from dev 2026-02-01 08:03:12 +00:00
normalize.go feat: fix year interpretation, new schedule format, exclude today from backfill 2026-02-09 02:00:18 -05:00
parse_numeric.go fix: genome query RBAC - use system context for data access 2026-02-07 16:31:17 -05:00
roles.go feat: add Terms of Service page and legal page updates 2026-02-08 04:59:59 -05:00
signal.go Initial commit from dev 2026-02-01 08:03:12 +00:00
tracker.go refactor: rename prompt to tracker everywhere 2026-02-09 02:05:17 -05:00
translate.go Initial commit from dev 2026-02-01 08:03:12 +00:00
types.go refactor: move genome query to lib, add sensitive variant redaction 2026-02-09 17:23:25 -05:00
v2.go feat: optimize genome queries with IN clauses, dedup, repute filter 2026-02-10 02:13:18 -05:00