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James c1cd76559d fix: genome query RBAC - use system context for data access 
- Updated all genome functions to accept AccessContext parameter
- GenomeGetExtraction, GenomeGetTiers, GenomeGetTierByCategory,
  GenomeGetVariants, GenomeGetVariantsByTier now pass context to EntryList
- API genome handler uses system context after dossier access check
- Categories endpoint uses system context for counting operations
- Fixes MCP query_genome returning 403/no data errors

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
 		2026-02-07 16:31:17 -05:00
..
soc2 fix: genome query RBAC - use system context for data access 2026-02-07 16:31:17 -05:00
._.DS_Store Initial commit from dev 2026-02-01 08:03:12 +00:00
INTAKE_SYSTEM_SPEC.md Initial commit from dev 2026-02-01 08:03:12 +00:00
SCHEMA.sql Initial commit 2026-02-01 02:43:27 -05:00
SCHEMA_OLD.sql Initial commit from dev 2026-02-01 08:03:12 +00:00
TODO.md Initial commit from dev 2026-02-01 08:03:12 +00:00
anthropic-submission.md Initial commit from dev 2026-02-01 08:03:12 +00:00
api-design-2026-01.md Initial commit from dev 2026-02-01 08:03:12 +00:00
mcp-usage-examples.md Initial commit from dev 2026-02-01 08:03:12 +00:00
rbac-design-2026-01.md Initial commit from dev 2026-02-01 08:03:12 +00:00
reference-mccalip-style.css Initial commit from dev 2026-02-01 08:03:12 +00:00
schema-auth.sql Initial commit from dev 2026-02-01 08:03:12 +00:00
schema.sql fix: genome query RBAC - use system context for data access 2026-02-07 16:31:17 -05:00
store-consolidation-plan.md Initial commit from dev 2026-02-01 08:03:12 +00:00
update-2026-01-19-portal-cleanup.md Initial commit from dev 2026-02-01 08:03:12 +00:00