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James 20c33d2fb2 Document processing pipeline: OpenRouter OCR + Stepfun extraction 
- Switch OCR from Fireworks Qwen to Gemini 3 Flash via OpenRouter
- Switch extraction/translation to Stepfun Step 3.5 Flash via OpenRouter
- Add CallOpenRouter() to lib/llm.go (OpenAI-compatible API)
- Add OpenRouter API key support to lib/config.go
- Fix extraction preamble causing Stepfun reasoning model to return null content
  (heavy user-message preamble → short system message)
- Fix timestamp fallback: no date = 0, not today
- Fix document type: use file extension instead of hardcoded "pdf"
- Fix findUploadByFilename: Value filter was silently ignored, returning all uploads
- Fix entryQuery: skip category filter when EntryID is specified
- Fix extraction prompt contamination: replace real patient examples with generic ones
- Add reprocess button (↻) for document uploads
- Add delete cascade for upload entries (removes created document/extraction entries)
- Add upload/reprocess/delete logging throughout pipeline
- Consolidated templates, translations, email templates, landing pages
- Portal: defense, genome, dossier sections, MCP, OAuth updates
- Tools: translate pipeline improvements

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
 		2026-03-15 05:28:05 -04:00
..
templates Document processing pipeline: OpenRouter OCR + Stepfun extraction 2026-03-15 05:28:05 -04:00
._db_schema.go Initial commit from dev 2026-02-01 08:03:12 +00:00
config.go Document processing pipeline: OpenRouter OCR + Stepfun extraction 2026-03-15 05:28:05 -04:00
crypto.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
data.go.bak Refactor: Remove legacy v2, data, roles modules; update auth, queries, translations, portal MCP tools 2026-02-13 15:30:22 -05:00
db_auth.go Initial commit from dev 2026-02-01 08:03:12 +00:00
db_queries.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
db_schema.go Checkpoint: all pending changes across lib, portal, api, tools 2026-03-11 23:37:44 -04:00
dbcore.go Document processing pipeline: OpenRouter OCR + Stepfun extraction 2026-03-15 05:28:05 -04:00
dicom.go Checkpoint: all pending changes across lib, portal, api, tools 2026-03-11 23:37:44 -04:00
email.go Checkpoint: all pending changes across lib, portal, api, tools 2026-03-11 23:37:44 -04:00
errors.go Initial commit from dev 2026-02-01 08:03:12 +00:00
files.go Initial commit from dev 2026-02-01 08:03:12 +00:00
journal.go refactor: unexport raw DB functions, enforce RBAC at data layer 2026-02-10 02:34:51 -05:00
lab_reference.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
lib_test.go Add comprehensive test suite: labs, entries, dossiers, readings 2026-02-28 07:20:44 -05:00
llm.go Document processing pipeline: OpenRouter OCR + Stepfun extraction 2026-03-15 05:28:05 -04:00
normalize.go Checkpoint: all pending changes across lib, portal, api, tools 2026-03-11 23:37:44 -04:00
notify.go Checkpoint: all pending changes across lib, portal, api, tools 2026-03-11 23:37:44 -04:00
parse_numeric.go fix: genome query RBAC - use system context for data access 2026-02-07 16:31:17 -05:00
rbac.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
roles.go.bak Refactor: Remove legacy v2, data, roles modules; update auth, queries, translations, portal MCP tools 2026-02-13 15:30:22 -05:00
stubs.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
tracker.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
translate.go Document processing pipeline: OpenRouter OCR + Stepfun extraction 2026-03-15 05:28:05 -04:00
types.go Lab reference charts, import tracking, DossierFromEntry consolidation 2026-02-24 05:15:03 -05:00
v2.go.bak Refactor: Remove legacy v2, data, roles modules; update auth, queries, translations, portal MCP tools 2026-02-13 15:30:22 -05:00