fix: resolve all 44 failing CI E2E tests (#64)

* fix: resolve all 44 failing CI E2E tests

- Bypass non-critical rate limiters in test env (MC_DISABLE_RATE_LIMIT=1)
  to prevent 429s when 165 tests share the same IP bucket
- Make admin seed idempotent (INSERT OR IGNORE) to fix UNIQUE constraint
  race when multiple Next.js workers initialize concurrently
- Add distinct x-forwarded-for headers to login-flow tests so they never
  share the critical login rate-limit bucket with other test suites
- Add missing 018_token_usage migration that the heartbeat POST handler
  depends on, fixing the 500 on inline token reporting

* docs: update README with latest features and test count

- Update migration count from 15 to 18
- Update E2E test count from 146 to 165
- Move Direct CLI, OpenAPI docs, and GitHub sync to completed roadmap
- Add Direct CLI and GitHub sync feature descriptions
- Add /api/connect and /api/github to API reference
- Remove resolved known limitation (vitest stubs)
- Update repo description

* fix: prevent build-time admin seed with wrong credentials in CI

Move `cp .env.test .env` before `pnpm build` in CI workflow so env vars
are present during build. Add NEXT_PHASE guard to skip seed during build
as belt-and-suspenders — env vars may not be available at build time.

Root cause: `next build` imports db.ts, triggering seedAdminUserFromEnv()
with undefined AUTH_USER/AUTH_PASS, seeding user `admin` instead of
`testadmin`. Runtime seed then sees count > 0 and skips. Tests login
as `testadmin` which doesn't exist → 401.

.env.test

@@ -5,3 +5,4 @@ AUTH_SECRET=test-legacy-secret
 MC_ALLOW_ANY_HOST=1
 MC_COOKIE_SECURE=
 MC_COOKIE_SAMESITE=lax
+MC_DISABLE_RATE_LIMIT=1

.github/workflows/quality-gate.yml

@@ -39,12 +39,12 @@ jobs:
       - name: Unit tests
         run: pnpm test
 
-      - name: Build
-        run: pnpm build
-
       - name: Prepare E2E environment
         run: cp .env.test .env
 
+      - name: Build
+        run: pnpm build
+
       - name: Install Playwright browsers
         run: pnpm exec playwright install --with-deps
 

README.md

@@ -61,7 +61,6 @@ Initial login is seeded from `AUTH_USER` / `AUTH_PASS` on first run.
 ### Known Limitations
 
 - **CSP still includes `unsafe-inline`** — `unsafe-eval` has been removed, but inline styles remain for framework compatibility
-- **Vitest stubs need real assertions** — unit test files exist but most are placeholder stubs
 
 ### Security Considerations
 
@@ -87,6 +86,12 @@ Token usage dashboard with per-model breakdowns, trend charts, and cost analysis
 ### Background Automation
 Scheduled tasks for database backups, stale record cleanup, and agent heartbeat monitoring. Configurable via UI or API.
 
+### Direct CLI Integration
+Connect Claude Code, Codex, or any CLI tool directly to Mission Control without requiring a gateway. Register connections, send heartbeats with inline token reporting, and auto-register agents.
+
+### GitHub Issues Sync
+Inbound sync from GitHub repositories with label and assignee mapping. Synced issues appear on the task board alongside agent-created tasks.
+
 ### Integrations
 Outbound webhooks with delivery history, configurable alert rules with cooldowns, and multi-gateway connection management. Optional 1Password CLI integration for secret management.
 
@@ -108,7 +113,7 @@ mission-control/
 │   ├── lib/
 │   │   ├── auth.ts            # Session + API key auth, RBAC
 │   │   ├── db.ts              # SQLite (better-sqlite3, WAL mode)
-│   │   ├── migrations.ts      # 15 schema migrations
+│   │   ├── migrations.ts      # 18 schema migrations
 │   │   ├── scheduler.ts       # Background task scheduler
 │   │   ├── webhooks.ts        # Outbound webhook delivery
 │   │   └── websocket.ts       # Gateway WebSocket client
@@ -128,7 +133,7 @@ mission-control/
 | Charts | Recharts 3 |
 | Real-time | WebSocket + Server-Sent Events |
 | Auth | scrypt hashing, session tokens, RBAC |
-| Testing | Vitest + Playwright (146 E2E tests) |
+| Testing | Vitest + Playwright (165 E2E tests) |
 
 ## Authentication
 
@@ -233,6 +238,18 @@ All endpoints require authentication unless noted. Full reference below.
 | `GET/POST/PUT/DELETE` | `/api/alerts` | admin | Alert rules |
 | `GET/POST/PUT/DELETE` | `/api/gateways` | admin | Gateway connections |
 | `GET/PUT/DELETE/POST` | `/api/integrations` | admin | Integration management |
+| `POST` | `/api/github` | admin | Trigger GitHub Issues sync |
+
+</details>
+
+<details>
+<summary><strong>Direct CLI</strong></summary>
+
+| Method | Path | Role | Description |
+|--------|------|------|-------------|
+| `POST` | `/api/connect` | operator | Register direct CLI connection |
+| `GET` | `/api/connect` | viewer | List active connections |
+| `DELETE` | `/api/connect` | operator | Disconnect CLI session |
 
 </details>
 
@@ -339,13 +356,15 @@ See [open issues](https://github.com/builderz-labs/mission-control/issues) for p
 - [x] Export endpoint row limits ([#43](https://github.com/builderz-labs/mission-control/issues/43))
 - [x] Fill in Vitest unit test stubs with real assertions
 
+- [x] Direct CLI integration — connect tools like Codex, Claude Code, or custom CLIs directly without requiring a gateway ([#61](https://github.com/builderz-labs/mission-control/pull/61))
+- [x] OpenAPI 3.1 documentation with Scalar UI ([#60](https://github.com/builderz-labs/mission-control/pull/60))
+- [x] GitHub Issues sync — inbound sync with label/assignee mapping ([#63](https://github.com/builderz-labs/mission-control/pull/63))
+
 **Up next:**
 
 - [ ] Agent-agnostic gateway support — connect any orchestration framework (OpenClaw, ZeroClaw, OpenFang, NeoBot, IronClaw, etc.), not just OpenClaw
-- [ ] Direct CLI integration — connect tools like Codex, Claude Code, or custom CLIs directly without requiring a gateway
 - [ ] Native macOS app (Electron or Tauri)
 - [ ] First-class per-agent cost breakdowns — dedicated panel with per-agent token usage and spend (currently derivable from per-session data)
-- [ ] OpenAPI / Swagger documentation
 - [ ] Webhook retry with exponential backoff
 - [ ] OAuth approval UI improvements
 - [ ] API token rotation UI

src/lib/db.ts

@@ -74,6 +74,9 @@ function initializeSchema() {
 interface CountRow { count: number }
 
 function seedAdminUserFromEnv(dbConn: Database.Database): void {
+  // Skip seeding during `next build` — env vars may not be available yet
+  if (process.env.NEXT_PHASE === 'phase-production-build') return
+
   const count = (dbConn.prepare('SELECT COUNT(*) as count FROM users').get() as CountRow).count
   if (count > 0) return
 
@@ -82,7 +85,7 @@ function seedAdminUserFromEnv(dbConn: Database.Database): void {
   const displayName = username.charAt(0).toUpperCase() + username.slice(1)
 
   dbConn.prepare(`
-    INSERT INTO users (username, display_name, password_hash, role)
+    INSERT OR IGNORE INTO users (username, display_name, password_hash, role)
     VALUES (?, ?, ?, ?)
   `).run(username, displayName, hashPassword(password), 'admin')
 

src/lib/migrations.ts

@@ -477,6 +477,24 @@ const migrations: Migration[] = [
         CREATE INDEX IF NOT EXISTS idx_github_syncs_created_at ON github_syncs(created_at);
       `)
     }
+  },
+  {
+    id: '018_token_usage',
+    up: (db) => {
+      db.exec(`
+        CREATE TABLE IF NOT EXISTS token_usage (
+          id INTEGER PRIMARY KEY AUTOINCREMENT,
+          model TEXT NOT NULL,
+          session_id TEXT NOT NULL,
+          input_tokens INTEGER NOT NULL DEFAULT 0,
+          output_tokens INTEGER NOT NULL DEFAULT 0,
+          created_at INTEGER NOT NULL DEFAULT (unixepoch())
+        );
+        CREATE INDEX IF NOT EXISTS idx_token_usage_session_id ON token_usage(session_id);
+        CREATE INDEX IF NOT EXISTS idx_token_usage_created_at ON token_usage(created_at);
+        CREATE INDEX IF NOT EXISTS idx_token_usage_model ON token_usage(model);
+      `)
+    }
   }
 ]
 

tests/login-flow.spec.ts

@@ -18,7 +18,8 @@ test.describe('Login Flow', () => {
 
   test('login API returns session cookie on success', async ({ request }) => {
     const res = await request.post('/api/auth/login', {
-      data: { username: 'testadmin', password: 'testpass123' }
+      data: { username: 'testadmin', password: 'testpass123' },
+      headers: { 'x-forwarded-for': '10.88.88.1' }
     })
     expect(res.status()).toBe(200)
 
@@ -38,7 +39,8 @@ test.describe('Login Flow', () => {
   test('session cookie grants API access', async ({ request }) => {
     // Login to get a session
     const loginRes = await request.post('/api/auth/login', {
-      data: { username: 'testadmin', password: 'testpass123' }
+      data: { username: 'testadmin', password: 'testpass123' },
+      headers: { 'x-forwarded-for': '10.88.88.2' }
     })
     expect(loginRes.status()).toBe(200)
 
@@ -50,7 +52,7 @@ test.describe('Login Flow', () => {
 
     // Use the session cookie to access /api/auth/me
     const meRes = await request.get('/api/auth/me', {
-      headers: { 'cookie': `mc-session=${sessionToken}` }
+      headers: { 'cookie': `mc-session=${sessionToken}`, 'x-forwarded-for': '10.88.88.2' }
     })
     expect(meRes.status()).toBe(200)
     const body = await meRes.json()